PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676768768
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family HSF
Protein Properties Length: 497aa    MW: 55402.4 Da    PI: 4.5089
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676768768genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.52.9e-35421332102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y+i++d+++++++sws+n+nsf+v+d+  fa+++Lpk Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll++i 
     676768768  42 FLSKTYDIVDDPSTDSIVSWSSNNNSFIVWDPPLFARDLLPKNFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLKTIT 129
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
     676768768 130 RRKP 133
                   *986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.1E-3835126IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467859.52E-3637131IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.0E-6238131IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.9E-3142131IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-194265IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-198092IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434081105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-1993105IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MDAGESGGGD KAGSVTVEST EIQPQTQPQP VAVLTANAPP PFLSKTYDIV DDPSTDSIVS  60
WSSNNNSFIV WDPPLFARDL LPKNFKHNNF SSFVRQLNTY GFRKVDPDRW EFANEGFLRG  120
QKHLLKTITR RKPAHAHGHG HQQSQHSNGQ NSSVNACVEV GKFGLEEEVE RLKRDKNVLM  180
QELVRLRQQQ QSTDNQLQTM VQRLQGMENR QQQLMSFLAK AVQSPHFLSQ FLQQQNQQNE  240
SSRRISDTSK KRRFKRDGIA SNKDSSASPD GQIVKYQPPM HEQAKAMFKQ LMKMEPYKTG  300
DDGFLLGNGN STTPEGNEMD ISSNNVSGIT LQEMPTASEI QSPSPSGATP ENVTVAEFPT  360
PVDAIPSSDG LSLPDFADML PESIAEVPPG NFMEPNMDSF SPFGDSDPLF NGDLPFDLDE  420
ILKDPDLDPL VEDYASLFED VLNSSPVPDD MDVTPVDVGT KDSETEQKQN EWNKTKHMDN  480
LTQQMDLLSP ETKDLSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-254013127129Heat shock factor protein 1
5d5v_B2e-254013127129Heat shock factor protein 1
5d5v_D2e-254013127129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1249254KKRRFK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013586097.10.0PREDICTED: heat stress transcription factor A-1d
SwissprotQ9LQM70.0HFA1D_ARATH; Heat stress transcription factor A-1d
TrEMBLA0A0D3CDP80.0A0A0D3CDP8_BRAOL; Uncharacterized protein
STRINGBra023258.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64702440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.10.0heat shock transcription factor A1D